Partly melted DNA conformations obtained with a probability peak finding method

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dc.creatorTostesen, E.
dc.date2004-04-19
dc.date2005-05-20
dc.date.accessioned2026-07-07T05:58:22Z
dc.date.available2026-07-07T05:58:22Z
dc.descriptionPeaks in the probabilities of loops or bubbles, helical segments, and unzipping ends in melting DNA are found in this article using a peak finding method that maps the hierarchical structure of certain energy landscapes. The peaks indicate the alternative conformations that coexist in equilibrium and the range of their fluctuations. This yields a representation of the conformational ensemble at a given temperature, which is illustrated in a single diagram called a stitch profile. This article describes the methodology and discusses stitch profiles vs. the ordinary probability profiles using the phage lambda genome as an example.
dc.description11 pages, 9 figures; v3: major changes; v4: applications section
dc.identifierhttps://arxiv.org/abs/q-bio/0404019
dc.identifierhttp://arxiv.org/abs/q-bio/0404019
dc.identifierPhys. Rev. E 71, 061922 (2005)
dc.identifierdoi:10.1103/PhysRevE.71.061922
dc.identifier.urihttp://salesiana.dossiersoluciones.com/handle/123456789/88332
dc.subjectBiomolecules
dc.subjectGenomics
dc.titlePartly melted DNA conformations obtained with a probability peak finding method
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