Sensitivity of Phage Lambda upon Variations of the Gibbs Free Energy
| dc.creator | Bakk, Audun | |
| dc.creator | Metzler, Ralf | |
| dc.creator | Sneppen, Kim | |
| dc.date | 2003-10-28 | |
| dc.date.accessioned | 2026-07-07T02:54:28Z | |
| dc.date.available | 2026-07-07T02:54:28Z | |
| dc.description | We investigate the sensitivity of production rates (activities) of the regulatory proteins CI (repressor) and Cro at the right operator (O_R}) of bacteriophage lambda. The DNA binding energies of CI, Cro, and RNA polymerase are perturbed to check the uncertainty of the activity, due to the experimental error, by means of a computational scattering method according to which the binding energies are simultaneously chosen at random around the literature values, with a width corresponding to the experimental error. In a grand canonical ensemble, with the randomly drawn protein-DNA binding energies as input, we calculate the corresponding activities of the promoters P_RM and P_R. By repeating this procedure we obtain a mean value of the activity that roughly corresponds to wild-type (unperturbed) activity. The standard deviation emerging from this scheme, a measure of the sensitivity due to experimental error, is significant (typically > 20% relative to wild-type activity), but still the promoter activities are sufficiently separated to make the switch feasible. We also suggest a new compact way of presenting repressor and Cro data. | |
| dc.description | 13 pages, 4 figures, LaTeX | |
| dc.identifier | https://arxiv.org/abs/cond-mat/0310656 | |
| dc.identifier | http://arxiv.org/abs/cond-mat/0310656 | |
| dc.identifier.uri | http://salesiana.dossiersoluciones.com/handle/123456789/22557 | |
| dc.subject | Statistical Mechanics | |
| dc.subject | Molecular Networks | |
| dc.title | Sensitivity of Phage Lambda upon Variations of the Gibbs Free Energy | |
| dc.type | text |