Prediction of protein secondary structure based on residue pairs
| dc.creator | Liu, Xin | |
| dc.creator | Zhang, Li-mei | |
| dc.creator | Zheng, Wei-Mou | |
| dc.date | 2002-12-18 | |
| dc.date | 2004-06-15 | |
| dc.date.accessioned | 2026-07-07T05:48:35Z | |
| dc.date.available | 2026-07-07T05:48:35Z | |
| dc.description | The GOR program for predicting protein secondary structure is extended to include triple correlation. A score system for a residue pair to be at certain conformation state is derived from the conditional weight matrix describing amino acid frequencies at each position of a window flanking the pair under the condition for the pair to be at the fixed state. A program using this score system to predict protein secondary structure is established. After training the model with a learning set created from PDB\_SELECT, the program is tested with two test sets. As a method using single sequence for predicting secondary structures, the approach achieves a high accuracy near 70%. | |
| dc.description | 13 pages, 2 figures | |
| dc.identifier | https://arxiv.org/abs/physics/0212065 | |
| dc.identifier | http://arxiv.org/abs/physics/0212065 | |
| dc.identifier.uri | http://salesiana.dossiersoluciones.com/handle/123456789/85076 | |
| dc.subject | Biological Physics | |
| dc.subject | Quantitative Biology | |
| dc.title | Prediction of protein secondary structure based on residue pairs | |
| dc.type | text |