Fine-grained parallelization of similarity search between protein sequences

Thumbnail Image

Date

Authors

Journal Title

Journal ISSN

Volume Title

Publisher

Abstract

Description

This report presents the implementation of a protein sequence comparison algorithm specifically designed for speeding up time consuming part on parallel hardware such as SSE instructions, multicore architectures or graphic boards. Three programs have been developed: PLAST-P, TPLAST-N and PLAST-X. They provide equivalent results compared to the NCBI BLAST family programs (BLAST-P, TBLAST-N and BLAST-X) with a speed-up factor ranging from 5 to 10.

Keywords

Quantitative Methods

Citation

URI

http://salesiana.dossiersoluciones.com/handle/123456789/212414

Consulte el texto completo en el siguiente enlace:

https://arxiv.org/abs/0804.3643
 http://arxiv.org/abs/0804.3643

Collections

arXiv