Fine-grained parallelization of similarity search between protein sequences

Simple item page
dc.creatorNguyen, Van Hoa
dc.creatorLavenier, Dominique
dc.date2008-04-23
dc.date.accessioned2026-07-07T12:18:27Z
dc.date.available2026-07-07T12:18:27Z
dc.descriptionThis report presents the implementation of a protein sequence comparison algorithm specifically designed for speeding up time consuming part on parallel hardware such as SSE instructions, multicore architectures or graphic boards. Three programs have been developed: PLAST-P, TPLAST-N and PLAST-X. They provide equivalent results compared to the NCBI BLAST family programs (BLAST-P, TBLAST-N and BLAST-X) with a speed-up factor ranging from 5 to 10.
dc.identifierhttps://arxiv.org/abs/0804.3643
dc.identifierhttp://arxiv.org/abs/0804.3643
dc.identifier.urihttp://salesiana.dossiersoluciones.com/handle/123456789/212414
dc.subjectQuantitative Methods
dc.titleFine-grained parallelization of similarity search between protein sequences
dc.typetext

Files

Collections

arXiv