Coupled dynamics of DNA-breathing and single-stranded DNA binding proteins

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dc.creatorAmbjornsson, Tobias
dc.creatorMetzler, Ralf
dc.date2004-11-30
dc.date2005-06-17
dc.date.accessioned2026-07-07T05:58:47Z
dc.date.available2026-07-07T05:58:47Z
dc.descriptionWe study the size fluctuations of a local denaturation zone in a DNA molecule in the presence of proteins that selectively bind to single-stranded DNA, based on a (2+1)-dimensional master equation. By tuning the physical parameters we can drive the system from undisturbed bubble fluctuations to full, binding protein-induced denaturation. We determine the effective free energy landscape of the DNA-bubble and explore its relaxation modes.
dc.descriptionREVTeX4, 4 pages, 5 figures, revised version
dc.identifierhttps://arxiv.org/abs/q-bio/0411053
dc.identifierhttp://arxiv.org/abs/q-bio/0411053
dc.identifier.urihttp://salesiana.dossiersoluciones.com/handle/123456789/88487
dc.subjectBiomolecules
dc.subjectStatistical Mechanics
dc.titleCoupled dynamics of DNA-breathing and single-stranded DNA binding proteins
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